@Manual{conduit-package,
  title = {conduit: Prototype glue system for openapi},
  author = {Ashley Noel Hinton and Paul Murrell},
  year = {2014},
  note = {R package version 0.1-0},
}
@Manual{xml-package,
  title = {XML: Tools for parsing and generating XML within R and S-Plus.},
  author = {Duncan Temple Lang},
  year = {2013},
  note = {R package version 3.98-1.1},
  url = {http://CRAN.R-project.org/package=XML},
}
@Manual{graph-package,
  title = {graph: graph: A package to handle graph data structures},
  author = {R. Gentleman and Elizabeth Whalen and W. Huber and S. Falcon},
  note = {R package version 1.44.1},
}
@Manual{RBGL-package,
  title = {RBGL: An interface to the BOOST graph library},
  author = {Vince Carey and Li Long and R. Gentleman},
  note = {R package version 1.42.0},
  url = {http://www.bioconductor.org},
}
@Manual{RCurl-package,
  title = {RCurl: General network (HTTP/FTP/...) client interface for R},
  author = {Duncan Temple Lang},
  year = {2014},
  note = {R package version 1.95-4.5},
  url = {http://CRAN.R-project.org/package=RCurl},
}
@Manual{devtools-package,
  title = {devtools: Tools to make developing R code easier},
  author = {Hadley Wickham and Winston Chang},
  year = {2014},
  note = {R package version 1.6.1},
  url = {http://CRAN.R-project.org/package=devtools},
}
@Manual{Rgraphviz-package,
  title = {Rgraphviz: Provides plotting capabilities for R graph objects},
  author = {Kasper Daniel Hansen and Jeff Gentry and Li Long and Robert Gentleman and Seth Falcon and Florian Hahne and Deepayan Sarkar},
  note = {R package version 2.10.0},
}
@Manual{gridGraphviz-package,
  title = {gridGraphviz: Drawing Graphs with Grid},
  author = {Paul Murrell and Ashley Noel Hinton},
  year = {2014},
  note = {R package version 0.3/r52},
  url = {http://R-Forge.R-project.org/projects/gridgraph/},
}
@Manual{knitr-package,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2014},
  note = {R package version 1.8},
  url = {http://yihui.name/knitr/},
}

@Book{,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2013},
  note = {ISBN 978-1482203530},
  url = {http://yihui.name/knitr/},
}

@InCollection{,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}
@Manual{rproject,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2014},
  url = {http://www.R-project.org/}
}
@Manual{python,
  title = {The Python language reference},
  author = {{Python Software Foundation}},
  version = {2.7},
  year = {2014},
  url = {https://docs.python.org/2.7/reference/index.html}
}
@Misc{gapminder2015,
  title = {About Gapminder},
  booktitle = {Gapminder},
  note = {Retrieved on 19 January 2015},
  url = {http://www.gapminder.org/about-gapminder/}
}
@Misc{orangesoftware2015,
  title = {Orange},
  url = {http://orange.biolab.si/},
  organization = {University of Ljubljana},
  note = {Retrieved on 19 January 2015}
}
@Misc{galaxywiki2015,
  title = {Galaxy Wiki},
  url = {https://wiki.galaxyproject.org/},
  note = {Retrieved on 19 January 2015}
}
@Misc{mortarluigi2015,
  title = {Luigi},
  url = {https://help.mortardata.com/technologies/luigi},
  organization = {Mortar},
  note = {Retrieved on 19 January 2015}
}
@Misc{flowbasedprogramming2015,
  title = {Flow-based Programming},
  author = {J Paul Rodker Morrison},
  url = {http://www.jpaulmorrison.com/fbp/},
  note = {Retrieved on 19 January 2015}
}
@Misc{wsdl2.0_2015,
  title = {Web Services Description Language (WSDL) Version 2.0 Part 1: Core Language},
  editor = {Roberto Chinnici and Jean-Jacques Moreau and Arthur Ryman and Sanjiva Weerawarana},
  month = jun,
  year = {2007},
  booktitle = {W3C Recommendation},
  organization = {W3C},
  url = {http://www.w3.org/TR/wsdl20},
  note = {Retrieved on 19 January 2015}
}
@Misc{opencpu2015,
  title = {OpenCPU},
  url = {https://www.opencpu.org/},
  note = {Retrieved on 19 January 2015}
}
@Misc{rcloud2015,
  title = {RCloud},
  url = {http://stats.research.att.com/RCloud/},
  organization = {AT&T},
  note = {Retrieved on 20 January 2015}
}
@Misc{elasticr2015,
  title = {ElasticR},
  url = {https://www.elasticr.com/welcome},
  organization = {Cloud Era Ltd.},
  note = {Retrieved on 20 January 2015}
}
@Misc{knime2015,
  title = {KNIME},
  url = {http://www.knime.org/about},
  organization = {Knime.com AG},
  note = {Retrieved on 20 January 2015}
}
@Misc{vistrails2015,
  title = {VisTrails},
  url = {http://www.vistrails.org/index.php/Main_Page},
  note = {Retrieved on 20 January 2015}
}
@Misc{alteryx2015,
  title = {alteryx},
  url = {http://www.alteryx.com/},
  organization = {Alteryx, Inc.},
  note = {Retrieved on 20 January 2015}
}
@Misc{juju2015,
  title = {ubuntu juju},
  url = {https://juju.ubuntu.com/},
  organization = {Canonical, Ltd.},
  note = {Retrieved on 20 January 2015}
}
@Misc{docker2015,
  title = {Docker},
  url = {https://www.docker.com/},
  organization = {Docker, Inc.},
  note = {Retrieved on 20 January 2015}
}
@Misc{vagrant2015,
  title = {Vagrant},
  url = {https://www.vagrantup.com/},
  organization = {HashiCorp},
  note = {Retrieved on 20 January 2015}
}