%.xml: %.cml
	# Protect HTML special chars in R code chunks
	Rscript -e 't <- readLines("$*.cml"); writeLines(gsub("str>", "strong>", gsub("<rcode([^>]*)>", "<rcode\\1><![CDATA[", gsub("</rcode>", "]]></rcode>", t))), "$*.xml")'
	# Expand element abbreviations
	Rscript tidy.R
	xsltproc expand.xsl $*-tidy.xml > $*-expanded.xml
	xsltproc contract.xsl $*-expanded.xml > $*.xml

%.Rhtml : %.xml
	# Transform to .Rhtml
	xsltproc knitr.xsl $*.xml > $*.Rhtml

%.html : %.Rhtml
	# Use knitr to produce HTML
	Rscript knit.R $<

all:
	make index.html
	# Make different theme versions
	Rscript themes.R
	# Make printable version
	Rscript print.R
	# Make R script
	Rscript script.R
	# Make speaker notes
	Rscript notes.R

web: 
	cp -r ../accessible-ggplot/* ~/Web/Talks/JSM2018/